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Use custom cif file as template

Status: Open.

#263 In bytedance/Protenix;

· paoloc03 opened on Mar 6, 2026

Can I use custom CCD for PTM?

Status: Open.

#245 In bytedance/Protenix;

· sangzhe opened on Mar 1, 2026

How were reported numbers for Runs n Poses benchmark calculated

Status: Open.

#244 In bytedance/Protenix;

· vinay-swamy opened on Feb 26, 2026

Store bond information for SMILES ligands

Status: Open.

#240 In bytedance/Protenix;

· Emrys-Merlin opened on Feb 18, 2026

Question about msa_server_mode

Status: Open.

#238 In bytedance/Protenix;

· awollacott opened on Feb 15, 2026

Model undertrained?

Status: Open.

#237 In bytedance/Protenix;

· dguzenko-pledge opened on Feb 13, 2026

[Feature Request] Add optional Amber relaxation to protenix pred (CUDA enabled)

Status: Open.

#236 In bytedance/Protenix;

· ullahsamee opened on Feb 13, 2026

Inference robustness: fix invalid MSA assertion, empty JSON crash, and fragile model_name parsing

Status: Open.

#234 In bytedance/Protenix;

· ullahsamee opened on Feb 13, 2026

Installation Failure： Error building extension 'fast_layer_norm_cuda_v2'

Status: Open.

#233 In bytedance/Protenix;

· Frank-LIU-520 opened on Feb 13, 2026

Ternary complex pocket residue constraints

Status: Open.

#232 In bytedance/Protenix;

· Zikca opened on Feb 13, 2026

Difference between v0.5.0 and v1.0.0

Status: Open.

#230 In bytedance/Protenix;

· abhinavb22 opened on Feb 9, 2026

Scoring only mode?

Status: Open.

#227 In bytedance/Protenix;

· gezmi opened on Feb 8, 2026